Skip to main content
Ctrl+K

gufe documentation

Site Navigation

  • Guide to GUFE
  • API docs
  • gufe Change Log

Site Navigation

  • Guide to GUFE
  • API docs
  • gufe Change Log

Section Navigation

  • components
    • component
      • Component
    • explicitmoleculecomponent
      • ExplicitMoleculeComponent
    • proteincomponent
      • ProteinComponent
      • negative_ions
      • positive_ions
    • smallmoleculecomponent
      • SmallMoleculeComponent
    • solventcomponent
      • SolventComponent
  • mapping
    • atom_mapper
      • AtomMapper
    • atom_mapping
      • AtomMapping
    • componentmapping
      • ComponentMapping
    • errors
      • AtomMappingError
    • ligandatommapping
      • LigandAtomMapping
  • protocols
    • errors
      • GufeProtocolError
      • MissingUnitResultError
      • ProtocolDAGResultError
      • ProtocolUnitExecutionError
      • ProtocolUnitFailureError
      • ProtocolValidationError
    • protocol
      • Protocol
      • ProtocolResult
    • protocoldag
      • execute_DAG
      • DAGMixin
      • ProtocolDAG
      • ProtocolDAGResult
    • protocolunit
      • Context
      • ProtocolUnit
      • ProtocolUnitFailure
      • ProtocolUnitResult
  • settings
    • models
      • BaseForceFieldSettings
      • OpenMMSystemGeneratorFFSettings
      • Settings
      • SettingsBaseModel
      • ThermoSettings
  • gufe.storage
    • errors
      • ChangedExternalResourceError
      • ExternalResourceError
      • MissingExternalResourceError
    • externalresource
      • base
        • ExternalStorage
        • Metadata
      • filestorage
        • FileStorage
      • memorystorage
        • MemoryStorage
  • transformations
    • transformation
      • NonTransformation
      • Transformation
      • TransformationBase
  • visualization
    • mapping_visualization
      • draw_mapping
      • draw_one_molecule_mapping
      • draw_unhighlighted_molecule
      • BLUE
      • RED
  • chemicalsystem
    • ChemicalSystem
  • custom_codecs
    • default_from_dict
    • inherited_is_my_dict
    • is_npy_dtype_dict
    • is_openff_quantity_dict
    • is_openff_unit_dict
  • custom_json
    • custom_json_factory
    • JSONCodec
    • JSONSerializerDeserializer
  • custom_typing
  • ligandnetwork
    • LigandNetwork
  • molhashing
    • deserialize_numpy
    • serialize_numpy
  • network
    • AlchemicalNetwork
  • tokenization
    • TOKENIZABLE_CLASS_REGISTRY
    • REMAPPED_CLASSES
    • TOKENIZABLE_REGISTRY
    • dict_decode_dependencies
    • dict_encode_dependencies
    • from_dict
    • get_all_gufe_objs
    • get_class
    • gufe_objects_from_shallow_dict
    • gufe_to_digraph
    • import_qualname
    • is_gufe_dict
    • is_gufe_key_dict
    • is_gufe_obj
    • key_decode_dependencies
    • key_encode_dependencies
    • key_renamed
    • modify_dependencies
    • module_qualname
    • nested_key_moved
    • new_key_added
    • old_key_removed
    • register_tokenizable_class
    • to_dict
    • tokenize
    • GufeKey
    • GufeTokenizable
    • KeyedChain
  • utils
    • ensure_filelike
  • API docs
  • gufe.storage

errors#

Exceptions

ChangedExternalResourceError

Error when there's a metadata mismatch with an external resource

ExternalResourceError

Base class for errors due to problems with external resources

MissingExternalResourceError

Error when the external resource could not be loaded

previous

gufe.storage

next

ChangedExternalResourceError

Show Source

© Copyright 2022, The OpenFE Development Team.

Created using Sphinx 8.1.3.

Built with the PyData Sphinx Theme 0.14.4.